NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075012_10737059

Scaffold Ga0075012_10737059


Overview

Basic Information
Taxon OID3300006033 Open in IMG/M
Scaffold IDGa0075012_10737059 Open in IMG/M
Source Dataset NameFreshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NamePennsylvania, USA
CoordinatesLat. (o)40.0132Long. (o)-79.0717Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015656Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0075012_107370591F015656N/AYKMKVFPEYFDFNQFEMSRENMHTIKRPYINFYKTVNFKFQEYNANIKIQCVHWHRLIRACVNVYGYFDFLKHIRCMEAVEYFKQCLQLNNFFAVHKKYFPNEYYHSEYWRVSPHYDNVFVDSD*
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