NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075365_10086514

Scaffold Ga0075365_10086514


Overview

Basic Information
Taxon OID3300006038 Open in IMG/M
Scaffold IDGa0075365_10086514 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2130
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019374Metagenome230Y
F097684Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0075365_100865142F097684GAGGMSSVASAAVRENAAPLVKGRQPTKFTPDNIARIKEWVAKGVGRDEIANRLEVTVGSLQVTCSKLGISLRRKSSLAEGNGAIQPLRVVQCSTEHIQQGNILARAKFIVLIKTQNKQAAFDLPLSQDLIIQLALEAAVRGQTIPDLIGKIVRRVLEKDLVGEILRNGNSHSQV*
Ga0075365_100865143F019374GGAMSASDEQLIRRLPTSDEYLAQRLTPYPLATTDGGLLHTVEDARTYMLTLPKTRKLRGHWQHVRRLVLQKADAAALTQQVQLALFMDGTLDAAPKQTSSARRWRRHTRAS*
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