NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066652_100116509

Scaffold Ga0066652_100116509


Overview

Basic Information
Taxon OID3300006046 Open in IMG/M
Scaffold IDGa0066652_100116509 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2184
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001203Metagenome / Metatranscriptome748Y
F057403Metagenome136Y
F094086Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0066652_1001165095F094086GGAGGMTRDQMRDEHDRLQEVLEAHEARAVASSMPDHHDGLRQRIAGLALKLAEANPA*
Ga0066652_1001165096F057403GGAGMDKTEAHAERTRLQHLLDAYEAGRLTHQDEDERGELKRDVTPDRADNVRARIARLDEVIAEADCANRD*
Ga0066652_1001165097F001203GGAGGMSAENWHEERDRLVQLLDAIEAGDVSHIDQDHLRQLQATNPKNVAMLRDRLAKLNA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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