NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066652_100212049

Scaffold Ga0066652_100212049


Overview

Basic Information
Taxon OID3300006046 Open in IMG/M
Scaffold IDGa0066652_100212049 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006293Metagenome / Metatranscriptome377Y
F019882Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Ga0066652_1002120491F006293GGAGGVRRLLALMLGVLGVLAAIGLSVSPARADTLADCLGQHHVCVTSDGRSLVSQSQQAQLERAIGNDDIYLVVAASGSAGYNPAMRQILSTLGSEKKQFVVGFLDSTRGHFGADSEGVLPAGAAANIATTVVKQHQSDHDVFAAMQDFVRDVQQEA
Ga0066652_1002120492F019882GAGMRYTLTVGLLVCMPTVALLAVAGVAALAGNLRQRLGREADHRQRERDMADAYVSGLRLVSGNDRDQLHDESLPCRLTADAVSRTA*
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