Scaffold Ga0066652_100620801

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066652_100620801

Scaffold Ga0066652_100620801

Overview

Basic Information
Taxon OID	3300006046 Open in IMG/M
Scaffold ID	Ga0066652_100620801 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1022
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015101	Metagenome	257	Y
F015118	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066652_1006208011	F015101	GGAG	MSLKGWVLNKVNRMFTRVDLPPRGMVLAEPVMRRPGEQRVAGLRATGDGHEMLPNPQHLGAYAPLVAAMREELEHFVASHVRMHLAIAEHDRYLLSSIEVECVNGDESRELLQRFVREFKPEQIKSYLAKEVIGRLPNASAIDLAHFGGLNAAPGSERAEAE
Ga0066652_1006208013	F015118	N/A	DRNDARWTKAIGVLTERNWIADTGRIHGAGDHGPNPAAEIAMQIAARHAGYLPGGDK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.