NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075024_100488560

Scaffold Ga0075024_100488560


Overview

Basic Information
Taxon OID3300006047 Open in IMG/M
Scaffold IDGa0075024_100488560 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.5935Long. (o)-78.5142Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065016Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0075024_1004885601F065016N/ALNIELGRTMAQDLFIGAFHIGVNIDHTEDFVTLHNLQQSVFWDEVESASYPTNLDTWVLNNGTALVVGRMDALEVNNFYVFSRFAGILLTDSPDATIPFTRNGWGSLSDIDLQTVQYGVIAIASESQGYKFSNLQIVAAPGLGQAAVLLQAGGTTPPDVLVNGGSVRGSWALGAFPTPQAGHLNLVHIQ*
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