NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0075417_10011800

Scaffold Ga0075417_10011800


Overview

Basic Information
Taxon OID3300006049 Open in IMG/M
Scaffold IDGa0075417_10011800 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3272
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005830Metagenome / Metatranscriptome389Y
F014442Metagenome / Metatranscriptome263Y
F026078Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0075417_100118002F014442AGGAGMIKFPSLDEEPLFTYEVSDEVLETAAGKEIAANFTLGSCTGLAECPA*
Ga0075417_100118004F026078AGGAGMRTLLGIAVVAVITAFAWSNLPTQAKQQFDGVSIDPLAMTDTVTNLLPEVHYDHGFIFPEQQ*
Ga0075417_100118005F005830GAGGMNKQWESERSRIEHADDAKITFTIALHGKHAWEMVLEDSHRYHSISHGWATDNPQDWEEAIAPLLRRLFVKGHLGLATKVPMYDQPDCSSATVAMYDPPLCSPATRAETNLNAGREHSYREAA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.