NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075417_10016289

Scaffold Ga0075417_10016289


Overview

Basic Information
Taxon OID3300006049 Open in IMG/M
Scaffold IDGa0075417_10016289 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007180Metagenome / Metatranscriptome356Y
F008593Metagenome331Y
F037290Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0075417_100162894F037290GGAMRVRDLLIFNLFLQLADGLVSYQAFALGAAEANPVVAAAIANWGMVWGLIYNKALACLLLLLIFALRPSQRLLAMRGLTVTASVYVCELLR*
Ga0075417_100162895F007180GGAMPQVQPEVTFRALSHLLIVFLASIPVVLSLVSMWKKNRFGWPLRGIIWFTVAIIAVIALLAGYVQKAKSLEKVSHRIEAVTSRDQLTQ*
Ga0075417_100162898F008593N/AMQPYGGYFIAGSALLAHPFSPDWYVGGSVLVPGRSSSIVEIGRFRFQRFTVGIKELAEWFGLEVARLVVDECLGQREN*
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