Scaffold Ga0075029_100358021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075029_100358021

Scaffold Ga0075029_100358021

Overview

Basic Information
Taxon OID	3300006052 Open in IMG/M
Scaffold ID	Ga0075029_100358021 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	941
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000309	Metagenome / Metatranscriptome	1327	Y
F026982	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075029_1003580212	F000309	GGAG	MKTGENQSLERTLESAIVVSWADLMRGAQTGLIHIEFGFAPEGTLDYLKVWSSLTRGHWLLACEYWMSASTFHSAGVRFDNAYESEGLTHILELVMQHQGEFVLPPNLGRQGLLQISTPTQEEIVAAGALVHQAFARLGSALAEPVLA*
Ga0075029_1003580213	F026982	N/A	VRRHQFNGLEVTEIVARSFLGLPYVTVSAHSRHMQQSCYLASAEAREISQNDAEWARG*

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