Scaffold Ga0097691_1047021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0097691_1047021

Scaffold Ga0097691_1047021

Overview

Basic Information
Taxon OID	3300006055 Open in IMG/M
Scaffold ID	Ga0097691_1047021 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1527
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053492	Metagenome	141	Y
F061466	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097691_10470212	F053492	AGG	MSAESQHEAKKVGAVVYLSTNRPLHLPDFLAEFHRSWPHLLLQKTGKEPHRALFRVGKSDFALELHHMPVPQGVTELVVDTTLHWPMAGAALAHHQAHMSVAESAQNRDVLTLACDLTKAIAALLPVTDSLAVCWLNGPALNSSESFVETAREKFGTGLYPLALWVAVGWDAQAGALQTRGMAQFDAPEICLAQQPDAAPLMVDYLVKVAQSVLTSHQQIADGETMDGPHGELKIKKSSAQGKRILILEPVHGR*
Ga0097691_10470213	F061466	GGAGG	MDEASVYTVERNAWSTVRQCDAHFRLTYEREFLPVQNLWRDFLVHSEETGSALPA*

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