NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075163_10002916

Scaffold Ga0075163_10002916


Overview

Basic Information
Taxon OID3300006056 Open in IMG/M
Scaffold IDGa0075163_10002916 Open in IMG/M
Source Dataset NameWastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23043
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location NameMilwaukee, Wisconsin, USA
CoordinatesLat. (o)43.023Long. (o)-87.895Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014032Metagenome / Metatranscriptome266Y
F025247Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0075163_1000291613F014032N/AMPRAVPAHVSTQTVRPELRLRTPYRGIETGKDTLRIRVQIAPRKQRPYEVVIDIDDLAVEVQGDAGFVLGAGTIDTLFVVERPPRYGFLTWFGVFARRRGRADQLLIETNESKVARFVERTIEDWLGLDTGPVRGELRLWD*
Ga0075163_100029165F025247N/AMLEAVQTVQSAGEDASWLAIRQPAVVHLLERELGGFAGFRDGDAFAAGLELASRVLGGPTPLSELRLDHKALATGLTAVRQGHCDRAMVRSIRDQIEELPVVLTPLEQDAVATVIAGVIWAVLDASVRDLDDELLA*
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