Scaffold Ga0075163_10010696

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075163_10010696

Scaffold Ga0075163_10010696

Overview

Basic Information
Taxon OID	3300006056 Open in IMG/M
Scaffold ID	Ga0075163_10010696 Open in IMG/M
Source Dataset Name	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11991
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location Name	Milwaukee, Wisconsin, USA
Coordinates	Lat. (^o)	43.023	Long. (^o)	-87.895	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083856	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075163_100106963	F083856	AGG	VQSLLRAEIEDRFPGARVAEHGTRTHAEVTWDGSMYRVRLEMEPIGRVVVSIPSTDGFELLLRWNDRHTNDGPRAPSFDDSFLVETNDLALAGVWLDAHCRDALLASRYVSSKNAERDTALLIRDGAWLHEVSNDEISARRKDPEPSVERMVDMLLVSLLLASRPLRWAKAFAAHGRALGGEPSNRIDVGGKPVLRVRRGAIDVVVRVVRRLGPGDPGRLRTIVSAHRQGSSGETLSLITEGLPRAAWPPPSDQSPGTLPIDARARKLLDAAKPSTTMVRRHDVEIAFDGGLVERDRLGAAIELAAHWAGDALTVGPYR*

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