NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075026_100552815

Scaffold Ga0075026_100552815


Overview

Basic Information
Taxon OID3300006057 Open in IMG/M
Scaffold IDGa0075026_100552815 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)670
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.5935Long. (o)-78.5142Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037102Metagenome / Metatranscriptome168Y
F095928Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0075026_1005528151F037102AGGAGGMNEFSPELTRQVLHPAMHQKLLLRAAEVIAQGWTRGTAARDADGQKVRSTSPQATRWCVVGAVDRALYELLTLDVYDLLSLEVDAYDAASCPLEVLRALRRPLQRVLGRRDLAHWNDHVCPDPATAEQLLREAAAQIGRPGPVGITPSQ*
Ga0075026_1005528152F095928N/ADFDLDRLVALCPTCHARTDAPYARGRLVIIPLGDGRFTCEVTRGADKWAIRA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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