NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081428_114908

Scaffold Ga0081428_114908


Overview

Basic Information
Taxon OID3300006068 Open in IMG/M
Scaffold IDGa0081428_114908 Open in IMG/M
Source Dataset NameHotspring Microbial Communities from Mammoth Norris Corridor Bijah Spring, Yellowstone National Park, Wyoming, USA ? Sample 4, Mini-Metagenomics
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1896
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hotsprings → Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.761133Long. (o)-110.7309Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006183Metagenome / Metatranscriptome379Y
F024799Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0081428_1149081F024799AGGMMMLPPKKMPITPSGKPENVAPVAPVVLYMIGVIAVFTQTVWLSVPGSEER
Ga0081428_1149082F006183AGGMVMVPPEKAPVTPAGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGSEVRVMVLSGCTIMVPVAVTFPQPPVKVTV*

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