NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007876_1009932

Scaffold Ga0007876_1009932


Overview

Basic Information
Taxon OID3300006071 Open in IMG/M
Scaffold IDGa0007876_1009932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2750
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F030333Metagenome185Y
F040990Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0007876_10099325F030333GGAMAVDRNPTLTIPVKTYSHYTECEPWCQANIGVWNETWWRDFPDMAAAVIIQGPHETCYWFATEQDALMFRLRFR*
Ga0007876_10099326F015302GGTGGMSQNEYYANTASRLDTIIGGDTSHFLRLQRVKNEYDALARDVPVGQGFLTFYDYVKEYYGVKLTYDGDDLKLEYAIVDERKYTMFLLKFGR*
Ga0007876_10099327F040990N/AMNYYYEIDPRHNSTMFGDTWRYWCMYNCSPADNGKMCFKTHDDFVARSTRVWLENANGVYMVKPAWDAKRLRVDPHEFTMVKLRARTIKWWHDEPE*
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