Scaffold Ga0007881_1010322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007881_1010322

Scaffold Ga0007881_1010322

Overview

Basic Information
Taxon OID	3300006072 Open in IMG/M
Scaffold ID	Ga0007881_1010322 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2842
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F009598	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007881_10103221	F009598	AGGA	MLDKQNVVVINIASESGHRGIVEQVAHEVYVKMVDYLRLTQSKNTYNRFTDYHYLQIPVSNSTEPVRGIDYIAPIVTPAIDYATAVITKCLMPDGEVNFEFGRFSEADAKACSQSTDMVKYFINDKNDPYAIIRDWAQDALLHKNGIVMVMPIREPI
Ga0007881_10103224	F001059	N/A	TAKDLAQFVYDKTQIALDLIGKPKEEQYLVAKNALEGKKIPSEYQTDENPYVDRKELIPVDEMKEIPPRSPDLPPETSRVHFFGATNMPHPLDPQSDRKVMINFWKYDNGMITYQISGPVEQIAIGSRINKFGQTQPEKYSWIDPRTEEMVLRRQDGSFTEKGRGIYSFCIGEKGAGIWSLIDKDIISFAEKNIANPWA*

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