NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081761_1599923

Scaffold Ga0081761_1599923


Overview

Basic Information
Taxon OID3300006082 Open in IMG/M
Scaffold IDGa0081761_1599923 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.933231Long. (o)-130.013645Alt. (m)Depth (m)1542
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035475Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0081761_15999231F035475N/AMKNNYITIVGNLPISFDLHESMHIGPVIASANNNKSINFAYATCNSETNLQDMLNSTNFQGTNILVPEELFKKYVFFNETTCLPDFPGIKTLEIDPNNCTPQCLSLMLAVYLKPKVIFLLGYDLNNPIEFTRLKSIIISNPDVRFANICNPRIKKLDELDN
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