NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081762_1250062

Scaffold Ga0081762_1250062


Overview

Basic Information
Taxon OID3300006083 Open in IMG/M
Scaffold IDGa0081762_1250062 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameAxial seamount, northeast pacific ocean
CoordinatesLat. (o)45.9332Long. (o)-129.982268Alt. (m)Depth (m)1516
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008649Metagenome / Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0081762_12500622F008649AGGAMTKLETLMLDVTGTLNHNGFDEVKTVSNNTNFSLRAGYWDRIPSSLIETMEEYHNVRVTETFWDDEDCGTLYRYLVEVMDTGYTLNELNDLESNYTEEALYLESVEADDTWGNA*
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