Basic Information | |
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Taxon OID | 3300006091 Open in IMG/M |
Scaffold ID | Ga0082018_1011113 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Major University, Chile |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 1595 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013 |
Source Dataset Sampling Location | ||||||||
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Location Name | Eastern Topical South Pacific | |||||||
Coordinates | Lat. (o) | -13.71 | Long. (o) | -81.389 | Alt. (m) | Depth (m) | 405 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012921 | Metagenome / Metatranscriptome | 276 | Y |
F013815 | Metagenome / Metatranscriptome | 268 | Y |
F072442 | Metagenome / Metatranscriptome | 121 | Y |
F080505 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0082018_10111131 | F080505 | N/A | LVSARDDIWSQVDKTGRRWVELSWFANAQLGRTGPEFGKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGNIIYGYTKSKRMTDNAWDEQIVNNIKVKTIHIWPDKPGVFRQTEDEIKKQITDIKNWSIKAWDTTMDLEIYTREVVKKEIGK* |
Ga0082018_10111132 | F072442 | AGGA | MKTFKEFFQLGVTKPSKFDVQNYLNQLGTRLMQLPDIIRTIEKHFKNIKKLKLDRSGRKVLSFEEHIPEEITKRDIKKNK* |
Ga0082018_10111133 | F013815 | GGAG | MYFVQYEKTLPPWYIGTDKVQAETSEDAVKEFYKHHDSFEDRVRSVREVQDTYQK* |
Ga0082018_10111134 | F012921 | AGG | MADDFDFGFSAVSTDEFKKTQTDTEPTPSTGVSSDEFNELKKKIDSISSLIQTLGDKEDTSLFDETGETVKATGEKIARVEDKIDKILAMESSQVASALEEQGSSIRAVIDEVEERKGELNEKFSGKLKELESLVIPMLKGLMKNADKEYIYW |
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