NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0082018_1040239

Scaffold Ga0082018_1040239


Overview

Basic Information
Taxon OID3300006091 Open in IMG/M
Scaffold IDGa0082018_1040239 Open in IMG/M
Source Dataset NameMarine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMajor University, Chile
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon SCG-AAA382B04(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location
Location NameEastern Topical South Pacific
CoordinatesLat. (o)-13.71Long. (o)-81.389Alt. (m)Depth (m)405
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017841Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0082018_10402393F017841N/AMKIILSFILVVIFAGCSMFPSTTSVSATSKLEKIDNPTLKVEQNFKWN*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.