Scaffold Ga0082019_1007851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0082019_1007851

Scaffold Ga0082019_1007851

Overview

Basic Information
Taxon OID	3300006093 Open in IMG/M
Scaffold ID	Ga0082019_1007851 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP189
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Major University, Chile
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	2157
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location
Location Name	Eastern Topical South Pacific
Coordinates	Lat. (^o)	-13.71	Long. (^o)	-81.389	Alt. (m)		Depth (m)	115
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082019_10078513	F016734	N/A	MNSKQQKQYNSALDKMDLTESQRDAFDHSVKRSLIDLDTYQDTDTFSLHGYKLNRVMDDIVLAQYVDLSEDGSSVIRNGIHIPLAQVRRTWRMARVILVGPKCNYTKPGDIVCFPDDKGIKVDNLSVTGFDSSIRNCLFLNEDRFFGICEEIEPDDNRTE*
Ga0082019_10078514	F036473	GAG	MIIGLSNLKSMLLAKVCEVKFARRNPKPGRPASRRMLCTNNVQLLNSVEGRTVLNYRPPRQAPDYNPNQENLIITWDILMQDFRTINCDTVDLITTLEADETFWVYINEKIAPMSAPEKMAFMNT*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.