NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007810_1002025

Scaffold Ga0007810_1002025


Overview

Basic Information
Taxon OID3300006101 Open in IMG/M
Scaffold IDGa0007810_1002025 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5816
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009598Metagenome / Metatranscriptome315Y
F070626Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0007810_100202512F009598AGGMLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPIVTPGIDYATAVITKCLMPDGKVNFEFERFDESDQDGAEQATDMVKYFLNNKNNSYMTIRDWAQDALLHKNGIVMVMPVRENIIQYKEVTGTRDQLKVFEIEAAQKGLKPLRQEMRKVDVNLQQAMMEAMQPGDEQEAEQEVDPGAELNEAIRNNTVYRAKY
Ga0007810_10020252F070626AGGAGGMEIEWSLAHPLHDVEDIVNMADNIFGDEVEGLLTTERYIFRKNVTVASTVQIFDRSKEFLAVARDVSPEMGIRTRRLDKDTDGIEEIPVGIKNKLLGFCWFDRYGYTTYSNEEISNAKFHHVDLALPAKTRVKLINAMIDQHILWAYQNGIPVVCSTSIRSDYSGFMRIHEKRGFKVSGSYAWIRTKEGLNGIKGIEIANK*
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