NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007810_1014243

Scaffold Ga0007810_1014243


Overview

Basic Information
Taxon OID3300006101 Open in IMG/M
Scaffold IDGa0007810_1014243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1918
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005449Metagenome / Metatranscriptome400Y

Sequences

Protein IDFamilyRBSSequence
Ga0007810_10142433F005449N/AVPGQGVIASQGADRYSRVVMLTTAWMRKDVDGDGEEEIIELCYSGSYIIYCKEVDFIPLANMNPKPIVGNFFGYSLGERMVPLQEYATSIRRAELAFALQASTPRIGVNPEFLDAEEVQRGVSAMFILDRKFDPNKHVFEFAPLQGNLAYVQSSMERFDAEKMALIGMTSPGDTLNPEVMKDGNSGFKLQTAMGPNQLIQDEMVKNCAIGLKDVIYLVWKTMIQYADDYNIQQLAHVCAEDAGGFLDAQAVESYQFIDRKMISLDLAMGFMSEENRLTRQQLITAAQQQFGQAMMQVPPNLPEMFSKLRLPYEETLRVLGIKHLDSYLPTLQEWTQVMQAKAQQPPAIADQVETSKMEMNKAKAQETMMNTQFIKKKTEDIDTDNMFEALAASRDKLRAVQID*
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