NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007819_1019747

Scaffold Ga0007819_1019747


Overview

Basic Information
Taxon OID3300006105 Open in IMG/M
Scaffold IDGa0007819_1019747 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1619
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F039941Metagenome / Metatranscriptome162N
F057095Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0007819_10197471F017597AGGAMKKIFRSEKLLIKLAIKRKELIKKVKSSKSTLIKTEMITRILITALKAKQVIAIRFQVNQTNNLQIWGQGPNILST*
Ga0007819_10197474F039941N/AMDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENISLLIQLDLTLNEAEILYENLIECRLLHARYRQQPS*
Ga0007819_10197476F057095N/ALIKKESYPLQEVITFHNKKYRVQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQET*
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