NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007848_1006246

Scaffold Ga0007848_1006246


Overview

Basic Information
Taxon OID3300006111 Open in IMG/M
Scaffold IDGa0007848_1006246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2650
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100277Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0007848_10062464F100277AGAAGGMPSLKKSTSVPKKLGVKGDDTILKDAIDFLFQIKGIQYSQKHPDFVTPSAAEFFSHVINLTAECSPKKRNCLSNKFQSFLCFLTPMFHDVHMCSSILSSLTITIYALTLYHITGNYLREASPAATLDKALIIHNPNNIVEAVHENLHYFILNCMPYVPKQAIDKLIGVTDEFVKRTIIKLPNHVKSHIPALNIQEIGKDICHGLDMVYNYAPFFLQWKAPIAVLLTRCGMEPCRSMCEEIANFVRS*
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