NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007848_1016440

Scaffold Ga0007848_1016440


Overview

Basic Information
Taxon OID3300006111 Open in IMG/M
Scaffold IDGa0007848_1016440 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1495
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026798Metagenome / Metatranscriptome196N
F038078Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0007848_10164402F038078N/AMAAKDEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKAKVLANSEYWLLVDYIGMTIGRIFRCIDTINVEEEWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTEEGREDTISSSISKLNI*
Ga0007848_10164404F026798N/AMDKSKEKLISHNCIEESSKSKKGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLDVRQNFQDTNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQES
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