NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007815_1019861

Scaffold Ga0007815_1019861


Overview

Basic Information
Taxon OID3300006114 Open in IMG/M
Scaffold IDGa0007815_1019861 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013731Metagenome / Metatranscriptome268Y
F028984Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0007815_10198611F013731N/AEQEEFALHANNDEGQEAAIKITIANLQMEKLNTELSNYMVYSVPIELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWQRRQKADLIRGRVAASVITVLLLMWIWLMILSLTHSPSY
Ga0007815_10198614F028984GAGMSWLSWFFDDLFYWIAVIALAVGAASYVLSYLVGFLPMLKPHALVMKVVGLSLVVIGGYYVADHRGYERRVAEDKAEIERLNGEARAKEAELNTKLARATSQLKKAKDDIQTKQASINARIDSGELRFPSTCG
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