NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007837_1049606

Scaffold Ga0007837_1049606


Overview

Basic Information
Taxon OID3300006122 Open in IMG/M
Scaffold IDGa0007837_1049606 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)713
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037570Metagenome / Metatranscriptome167N
F057095Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0007837_10496061F057095N/AKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRIQKSKDIVTLEKVAIANKLLIKTLSEETRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQLEAKSRQWSNEYQET*
Ga0007837_10496062F037570AGTAGMNIKKLDLLKIRNLKFRASQRQIVIDRLLRKENLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQTVINGY*
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