NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007825_1035142

Scaffold Ga0007825_1035142


Overview

Basic Information
Taxon OID3300006125 Open in IMG/M
Scaffold IDGa0007825_1035142 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0007825_10351421F033695N/AMEGFNQEFKLAMEEVQELTRRSAMYSSRGNNGPTKVDIKAVQYYRIEVDKRIDYIQEMMEVFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYIS
Ga0007825_10351422F031767GGAMNNNPINQKKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKKDVSTNKNS*
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