Scaffold Ga0082047_10772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082047_10772

Scaffold Ga0082047_10772

Overview

Basic Information
Taxon OID	3300006159 Open in IMG/M
Scaffold ID	Ga0082047_10772 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Red Sea brine-pool interfase layer Discovery Deep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	King Abdullah University of Science and Technology
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	804
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea Brine-Pools

Source Dataset Sampling Location
Location Name	Red Sea
Coordinates	Lat. (^o)	21.28639	Long. (^o)	38.28722	Alt. (m)		Depth (m)	2038
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016735	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082047_107722	F016735	GGAG	MTDEMFALVWVLSFGLYLLIYTYWIPLRTQKKIETWLMSEESDETLLASLTVITNKIREQALVDFEEFMIPQARKSAIDFWNGAMGNAAQKLGETEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQKAADNKPKEKVTKLAHGKFGFD*

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