Scaffold Ga0075030_100013320

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075030_100013320

Scaffold Ga0075030_100013320

Overview

Basic Information
Taxon OID	3300006162 Open in IMG/M
Scaffold ID	Ga0075030_100013320 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7191
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005402	Metagenome / Metatranscriptome	402	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_1000133205	F005402	GGGGG	MKKYHLDRIISIATLVASLVAIVLVLKRPTPVAPRQAPTAIAEHAQSFDQKMTQFERATEQPQGASQIPYQASSSDSAPAQTPKAEVHINSDEISAVLAQSLGNAGAEGLNANAGSGAAPTIKDQQVSFDGDLVHGQFLTEVAGKDVWITVSGHIGEKDGYATFDPTEFKVGDLNVPVSLVNPALQKKLAEQRDRLKLPGGVGSMKVENGELVMQQK*

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