Scaffold Ga0075030_100332676

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075030_100332676

Scaffold Ga0075030_100332676

Overview

Basic Information
Taxon OID	3300006162 Open in IMG/M
Scaffold ID	Ga0075030_100332676 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1213
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019188	Metagenome	231	Y
F047848	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075030_1003326761	F019188	N/A	ILAYRAPNGDPLEPQILIDNKDKSTIAESDIDKLVRDAKERSIPVAALVAREESQLRQVDRDSRWSRKDGIWLLRTTRQWMARDLDVLKPIFERMRVQGFDLLERNSVLADELRRTLPEIDRIEKELGKAAKAIQSVSALVVRYRERLRELCDSSACRGSATAPERSGSIPTGIQFQMEGNRR*
Ga0075030_1003326763	F047848	AGTAGG	MDYAHVFVLRTLCFDEQGEIKSRNVAVTFDMFEAEDHRNKGVENGYDTFVVPGNW

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