Scaffold Ga0070715_10090180

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070715_10090180

Scaffold Ga0070715_10090180

Overview

Basic Information
Taxon OID	3300006163 Open in IMG/M
Scaffold ID	Ga0070715_10090180 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1409
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002750	Metagenome / Metatranscriptome	533	Y
F090942	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070715_100901802	F002750	GAGG	VRYFLQGLLQGRYVETLETEVARLRAENRALTNSLLGTAGFPPLEYAEPVKPQALPRLRKRSWHQIQALKEAESTKQ*
Ga0070715_100901804	F090942	N/A	VLTASGLPRPAPADDDRIGGWQRMYQLLESDAWLITENCAKLIDCLPQLVRDDRRVEDIRKVDGDDPADAARYGLVSGGRLAGVGAALSRYSGFDRSGEIAPLRAGQPPPLNSTEAPRFVTGMPLGEQIARQVTATDPTSQAIHYQRLESEARKQFRPKPLPRRR*

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