Basic Information | |
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Taxon OID | 3300006164 Open in IMG/M |
Scaffold ID | Ga0075441_10000180 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31683 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (62.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002915 | Metagenome / Metatranscriptome | 521 | Y |
F004166 | Metagenome / Metatranscriptome | 450 | N |
F006870 | Metagenome / Metatranscriptome | 363 | Y |
F007087 | Metagenome / Metatranscriptome | 358 | N |
F076523 | Metagenome | 118 | N |
F086197 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0075441_1000018011 | F006870 | N/A | MKKMSQILLLALSLVLMNKASSVETKLSPQGSDKYNVYIKGDAQSNEKKLRDIFQSKVNEICGTRFEIISIKMDQINKVGSKKNVLNGIFKCFVNSQM* |
Ga0075441_1000018012 | F007087 | AGG | MKKLLLIALTIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATKSLQVKDDSIVIDSMTYKSKKFDYGAIKGSSKYVKDDAQIIIETTQVSNECDTALLSVKLNRSSGMIESTSKRIGACDGSSFTTSSKFIGNCK* |
Ga0075441_1000018014 | F002915 | AGG | MKKLLLLLLTIPILGQSKEIFMNDQGLEIQYDKPSISCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKSMVEKLEKKSKGS* |
Ga0075441_1000018015 | F004166 | AGTAGG | MKKLFLLILLVPLISCSDHQTNNSWGSYATNKETQKQEFWFTSYKTRGECEADMYWQLEGEEDDSKKRISNWHKKPYGCHFMSNNKWLSMYYYLIYKDENLGCLWESSNPNVQIKYSVTLKSFKNVLEQGRCILGD* |
Ga0075441_1000018036 | F086197 | N/A | MKTKYNHSESGMVLVITLILILTLTILASSVFMSVNRYTETIDNISYRPQAMEAANSCIDQALDWLATSDGTNWRDGDTPIDLAAESNALNKKTVLEDTTMEGITRDDMFSVMLEKSSCTRVLITKVSSEASRGEGGGGEIGSETSYGSSVLKYVFKIEARGVFNVPLNSSGTAIKFDNWNTTSNVVDLEVHVGFSPT* |
Ga0075441_1000018040 | F076523 | N/A | TNLSLIMINLKITIFVLCIISALNIKAENKFETLCWDAMADMTIYMTSYGSTEEINDAEVYRWVDDNYVYQPLKTFLKRKWLPTLKTNEDFTLNNVYVMKDKYLSSCVAAIS* |
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