NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10000643

Scaffold Ga0075441_10000643


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10000643 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17631
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029568Metagenome / Metatranscriptome188Y
F043093Metagenome157Y
F084742Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0075441_100006431F043093N/AMNIYLDQKWNRIGISLSGGADSALLAYLICKNVSTTTDIHITNQIRMWKTRPWQGYVADGVINWLKQEFNNKFYIHKNLIPPELEEPTDYFIKDEYGKMKSGNRIILRSHNEYIAHQYNLDALYGGVNMNPDIDIPGQLDERNEGTLVPHFVHNGVDICHPF
Ga0075441_1000064313F084742AGAAGVPKNKLPPEVIKHWPEIFGDVEIKAVPIEYIHNIHVHFHDGKIWEIDLDKQASVGDGDVNIIENSLETFLEKYHDDISHVDFRLNTSKVVEDVKKRTKSFMKKRK*
Ga0075441_100006439F029568N/AMGYRYDLTNTHVEIYYKSTPEFEKARNLCLKEENWLRNNYTKDNLKVEEHTGYGVLYQTSTGKPMVMGGVFNDSRYPPNVAKQINRLYTFPDFRMTATDMTDGFRCTCKLIDALEEVNTYEVYLITMQNRPARPNRGFWKVWCKHMDIASEGAWALGTNGYIQTCPWPVQKCWQNFVWKETKQGAFDNWAPETITHAEWSELEEGK*

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