NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10001583

Scaffold Ga0075441_10001583


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10001583 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10874
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046025Metagenome / Metatranscriptome152N
F046651Metagenome / Metatranscriptome151N
F056919Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0075441_1000158313F056919AGGMKLKRVIQYAGAEIIETQPGLFTALPNTPSFYGSRQFKNLAKAKFYLKQWNRN*
Ga0075441_100015833F046651GAGMKITLIKNTTLESGKKLVKGTNLGVVNEYGQELIKAGKAVEIGAAAPLEKEDEQVNNLD*
Ga0075441_100015838F046025AGTAGMKVLFNQNISGADFYYLAGQVVELPAATAKDFLNAKFCEVVEDKQEVKAERAVSKKTTKRTTRAK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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