NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10006242

Scaffold Ga0075441_10006242


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10006242 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5215
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023219Metagenome211Y
F065136Metagenome128Y
F086194Metagenome111Y
F087779Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0075441_1000624211F023219GGAMVPHNKKETMLNNITNIVRSNQNAVMVRVGSTSQAVYTIFDLKSSSNSYTGSLAGAKSAWNRKYKNSRQFVAKGNHRFLTA*
Ga0075441_100062423F086194N/AMRVLTNYPEFTLADAISYLNERYDEYHDPEGEREHLDMLEEREMDSHIEHIRSQGGDYWRNDAGEWCCG*
Ga0075441_100062424F087779N/AMNKRHLIISQGAPTLDDGQCCVRVIEEQEVGPRTVHFNGRVNYGLPITNIMEEWDCYELRYTAGAREKFLGKALDPDLLT*
Ga0075441_100062429F065136AGGMKNTIRITKQGGMQYTFDNGYTLSIGCGIAHYSSNQDKDDAFGECTEVEVAVRNPAGGFVALEFDVAGWVKASVIPSLMRAVENKDWEHVALLCGQDEYDHGKNRRDLDASSTHSQPCGYYDDEDPYA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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