NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10013450

Scaffold Ga0075441_10013450


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10013450 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3451
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051480Metagenome / Metatranscriptome144Y
F068149Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0075441_100134502F068149GGAMTLDEFTIKFLQFVEESIENKKDDGYPVCPYARSARMKQTLQFIDARDDLTTLESFDPVTYQMGICWLGDVDDITPIEKVCEELSVKNDNLLYFTSTRTSGHFVKNFTDCVFVQRKDDLLEKRTHLKDNTTYYDSWPIDYYKLITGPNHS*
Ga0075441_100134503F051480N/ALIASRRPEEIAELVERYNKIQKDLESNYLDIVIRSEGAISYQDVMQMPVDSIKLLIERMNNRVEEINKSRSGSVR*
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