NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10030397

Scaffold Ga0075441_10030397


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10030397 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2196
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F007827Metagenome344Y
F025154Metagenome203Y
F038864Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0075441_1003039710F025154N/AMSPWDMVAELGIYTEEQIDDMVLCECEEILRQQK*
Ga0075441_100303974F007827AGGMKLTNKQKRSVKRRVQLEQGVSTPGTRVFVSKKLYTRKIKHKK*
Ga0075441_100303975F038864N/AMIDKKLIVSILELYKLDVVNREIAEHDQSLELLIKVNEQIKAIKEL*
Ga0075441_100303978F007611N/AMKKKWITVLDYETSRVYQYQVAINKHAEEFIIFKKHRLKDVEWMEHSDSRLITN*
Ga0075441_100303979F001802N/AMDNNNMNMKTIKQLKNNYLQLGNVIYRPYTVCELPANFGCIEFNEKEGVSEWFNYKGFTYLYEAMAKS*
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