Scaffold Ga0075441_10114294

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075441_10114294

Scaffold Ga0075441_10114294

Overview

Basic Information
Taxon OID	3300006164 Open in IMG/M
Scaffold ID	Ga0075441_10114294 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1030
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014555	Metagenome	262	Y
F060347	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075441_101142941	F014555	N/A	TFSMQLTGDGLTEQQTITIGSQGVDGTPASNGMTNMPFALDVAIPVTASNQVSIAVAMDVDVGTAQAAVTLVFA*
Ga0075441_101142942	F060347	AGGA	MDKKRKVYAPFSQTSEAGVAQTPVEGYIDVNQMIYPTVSTGTVNENGTWVGVKASDANFIDITKHVAVANGGETLSPDTGTVNFIDMTGFNDIQLAVKPTNGGNYAIEAVMGPDTNRYANLSPVAAGAGLRGNENTTGKDCDLLFRDTAESFTADVWNILSIRNVVANIKLLQFKITNNSGGESTMEVGIMRIV*

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