NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066836_10104360

Scaffold Ga0066836_10104360


Overview

Basic Information
Taxon OID3300006166 Open in IMG/M
Scaffold IDGa0066836_10104360 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1644
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006717Metagenome366Y
F027022Metagenome / Metatranscriptome196Y
F032811Metagenome179Y
F056894Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0066836_101043601F027022GGAMVTTTVMFAVQVVIVTWIVITNPEPCPKEYLDLGGDVTKYCEITSAGLGYTW
Ga0066836_101043603F056894GAGMNLGMRNGKMVGTTELNERMNGATVLARLTEYGMSAFTYANETQAMRARDRWRHSVMNETLSFDVIRGSRVWYVRVSERG*
Ga0066836_101043605F006717AGGAGMIELWIALVLTWHPSVERVVDKEFNTEKECWDYYETIIAPDTTLGEGKWGKQNLTHQDRRPDKNFHFKTNWNYPIRTYKGLGSTSSGKDQVWLSCEPKYAKIYNQ*
Ga0066836_101043606F032811N/AMRIAKGCYFEQEEDEPIDPIRGKKTSVDKPNPIYYRKSELDDIPDDYATRIMNMRQSQKVIPEREVKTPNGFAVTIAYNKSGYQVIPEGDLKS*
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