NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082029_1264950

Scaffold Ga0082029_1264950


Overview

Basic Information
Taxon OID3300006169 Open in IMG/M
Scaffold IDGa0082029_1264950 Open in IMG/M
Source Dataset NameTermite nest microbial communities from Madurai, India
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3322
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India

Source Dataset Sampling Location
Location NameMKU,India
CoordinatesLat. (o)9.941418Long. (o)78.008896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036415Metagenome / Metatranscriptome170Y
F057658Metagenome136N
F063061Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0082029_12649504F063061N/AMISVGAAFPYLVQSLMILALCFVWVAALLDVQSHMRKGVTSHKVLVFIAICISVLAVFLIVATDALFVENRGEPFSPWSDWGVRLGS*
Ga0082029_12649505F057658AGGMGDNHRIAEQHAQEMEPARPQSTDEAVQGRMARLDVSQELARYLLDLETRIWELEMDLKELKQRPN*
Ga0082029_12649506F036415AGGAGGVSEQRLQKYRPGDEIGMVLHIQHAPMHLREVTARLFSKGQEEGGIISHIDLSGTPGISEDQPSQLQAPLQSEVRLSAKVGPDDAPGVYRLNRVTVKTYGGREHHYSAEELDEMGFEIVEEPDNRPVLQLEMGFRTDY*
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