Basic Information | |
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Taxon OID | 3300006176 Open in IMG/M |
Scaffold ID | Ga0070765_100000005 Open in IMG/M |
Source Dataset Name | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 219362 |
Total Scaffold Genes | 189 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 143 (75.66%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002201 | Metagenome / Metatranscriptome | 584 | Y |
F011102 | Metagenome / Metatranscriptome | 295 | Y |
F014407 | Metagenome / Metatranscriptome | 263 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070765_100000005138 | F011102 | AGGCGG | LVEWRNLVCGVMIVILPTSLIAQDFSRALLHSDGGVWLNGNPAPNSSAIFPNDLVQTQKENTAKIDAEGSTATVQPDTIVQFDGDELILDHGGLQVNTSRGMKVRVNCLTVIPLTQEWTRYDVVDVDGRVMVAAHENDVKIHYRGGAIRQSKQGGSSDVVVHQGEQVTREERCGAPAKPSDALGADGPFLNSVWAKVAGIVAVGVITCYALCRTGEPMSPDKP* |
Ga0070765_100000005139 | F014407 | GGAGG | MRVSVCCTLFVLSALGIAFGQDTNFAAGPQYLLNNNSPLLARSISTPSMSLAGPLLEVGASNATGVLIPGAEAQTVIPPLAVALPRTDLASIYYGRPPVSVVEISFPEASGGSLSSNPLPASILDTGVWQITTAQALRERGYGVTLPEAAAHGKARTRHATHIYTNADIDRLHQRS* |
Ga0070765_10000000533 | F002201 | GGAG | MWIHEVAPERLAELFHHYHQALTPEMASTRGEGRGSWKEVSRQEKNRLVAAARLALLELESMTSERAKSRQYFAQPGEAEWGC* |
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