Basic Information | |
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Taxon OID | 3300006176 Open in IMG/M |
Scaffold ID | Ga0070765_100000034 Open in IMG/M |
Source Dataset Name | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 107923 |
Total Scaffold Genes | 100 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 65 (65.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003988 | Metagenome / Metatranscriptome | 458 | Y |
F022474 | Metagenome / Metatranscriptome | 214 | Y |
F029822 | Metagenome / Metatranscriptome | 187 | Y |
F078993 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070765_1000000343 | F003988 | N/A | VKRHYTIGRVKGGMKFSCTRCAHHVSTLDFDARDGNLRTQAATAINLHATTVHHEPVMFSSLDTQQRIWR* |
Ga0070765_10000003447 | F078993 | GGA | VQLTGGTTAEQAVHQRSTAQFTVATEENLKKIAGRQLTPSQQEMVSQIKQFMAQSKTAVAAGDLERGHDLALKAHLLSDELVKP* |
Ga0070765_10000003481 | F022474 | AGGAGG | VKTTLFAATLVVALTLSAAAQKKPAVSRHLAGSDHQAAGWTGTAVPPALCNPCLFYGGDINTADFNAAGMSEENTLLIPNSATYGNFNVPSGSTVTITGMLVNIQASANFDPVTATYDIRSGVTEGDGGTDIATNTVTATVAATGRNFIGLNEYTVAVNLSTPVVLGPGAYWVAVTPTCTNGGLDGSCFEGRFFVSNTTTKANNVHGGQESEHQMYLNAAFFGLTFANWCDADVADFNQAQCNSLSFGLMGSSSN* |
Ga0070765_10000003482 | F029822 | AGGAGG | VKTTLFAVALVVALSLSAMAQHSRPAMSQHRAGSATGTTVFKNSAHPQVPALCNPCLFYAGDLNPFDPNAAGMSDENTLLITEGGGATYAAVIIPTGVTATVSGIVFNVQADAAFDPMTASYDVRTGITDGNGGTSIASGSGSIAVQATGRNFLGLSEYSLAVSLSAPLTLTPGEYWFNLQPQCLNTLDGSCSVFRQFVSNTTQQTNRLNGWWQPAHEMFLNGAFYGITFTNWCDSELGFNPYQCAGMSFGLIGTE* |
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