Basic Information | |
---|---|
Taxon OID | 3300006176 Open in IMG/M |
Scaffold ID | Ga0070765_100003017 Open in IMG/M |
Source Dataset Name | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 10766 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007233 | Metagenome / Metatranscriptome | 355 | Y |
F033134 | Metagenome | 178 | Y |
F037842 | Metagenome / Metatranscriptome | 167 | N |
F044617 | Metagenome / Metatranscriptome | 154 | N |
F065986 | Metagenome | 127 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070765_1000030171 | F044617 | AGGA | MNTSPKESRQMPTITAMTAEERRKLDERIRDKHQKLRNKYPEIYGKVVDWIHHSVEDGTLYICIRFQDKTDFALEFSPQIVRVGTELCNSATGDFDVIRNYYKEERE* |
Ga0070765_1000030172 | F065986 | GGA | MSNIAKRQGRMIRKGKEVRFGSVHIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCAKISPSLKRFRLISIRTQNRLKG* |
Ga0070765_1000030174 | F037842 | AGGAGG | LKQKTVKAKGEGVEYPALSGKVTRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKTRPILRRVARK* |
Ga0070765_1000030175 | F033134 | AGGA | MEQEHESKQLITFNSLHIEVLGPRALGNSQPAIRGVTEFLHAAELDVRNLLRERAETSPILEGFRLRFG* |
Ga0070765_1000030176 | F007233 | GGAG | MANRKQKEHQRHLNLDTFSEGIKGKVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD* |
⦗Top⦘ |