NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079045_1000194

Scaffold Ga0079045_1000194


Overview

Basic Information
Taxon OID3300006180 Open in IMG/M
Scaffold IDGa0079045_1000194 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9560
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024140Metagenome / Metatranscriptome207Y
F067920Metagenome / Metatranscriptome125N
F101504Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0079045_100019410F067920N/AMPADLIFGISDQGLFGAISSVLEYILSFLKTLIEQASVYAIDFLKELWSNPTQTITFLTLLGVVLV*
Ga0079045_100019414F024140N/AMNWKPTSLSHIISIIGIMIALLGINAITFYYMHNLNNTQFLFMSLVNITGLIGMAYYMVSFSANEKGVTIQSKPETTT*
Ga0079045_10001944F101504GAGMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVGNTSFEANIMDKSYRYYNMRIPDNKPFQHIKIKELQHIKDKFENMKVDIDKQKVEAMANNFMTFNSVVRRYKIVNNFVKLTAILNNHKTATSEDYRFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYGNIFHYSKLKTYLNVSTKTIYNYAKANNIKIDNGYIIYDNERVLRVLRNVI*
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Institute for Fundamental Biomedical Research
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