NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079045_1000347

Scaffold Ga0079045_1000347


Overview

Basic Information
Taxon OID3300006180 Open in IMG/M
Scaffold IDGa0079045_1000347 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6989
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053392Metagenome / Metatranscriptome141N
F066921Metagenome126N
F094112Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0079045_100034711F094112AGGMSNVAVYKHGYNFITIARLVSSKVSLNFGLTTFNYPILAIFVYISNTSSPASGYIKTTITPLDEVTIGYGYSPTISYFIDPHKGAMYIPLAAYEYINITITPSAGANLVYDAFLYDWMGEN*
Ga0079045_10003474F066921GGAMGEENPQVSPKAAYNRAVRAEEKAENALNEIASLKSSIDELVRTLKGAPSQIQAQSLRPGQMIHTIISEDDEGITEEIVCPTCGTRELRKIPAKIEVKEKPVVPENYIPAPHSVSEAISLLESLHLPDGRTIFESDKFWSKLNEYAQKYVQNQKKR*
Ga0079045_10003478F053392GAGGMMSVPSYVTLTGPQTTVMPSSFVIAASAVAGSVIQGSILAFGPQSPAVAAPQVPITEVWSIVDIYIIGSVTPDALLSIYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPSSTWFTTITLLGANGSSQQTYTVYFSVIRAPYLPSASSK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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