NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079045_1001314

Scaffold Ga0079045_1001314


Overview

Basic Information
Taxon OID3300006180 Open in IMG/M
Scaffold IDGa0079045_1001314 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2937
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042426Metagenome / Metatranscriptome158N
F048414Metagenome / Metatranscriptome148Y
F061049Metagenome / Metatranscriptome132Y
F063847Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0079045_10013142F042426N/AMEGNVKRLMDLPLKSIYTVGQGETKSGFEVYYLFEYKSGNFSEKADNVYMIYATTVLGEWLTENFDKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPRAPVQVQEEGF*
Ga0079045_10013143F061049N/AMSIFIIRFEKDNSVIQEWAFEGNEDLEKSLIEMLDIDFQFINKIRGLEK*
Ga0079045_10013144F063847AGGGGGMRFKKYIFCYDQYSYLEDRIITHHVSIYAKNIKEAESKLEKLGYKDLYLKKKKRKVSY*
Ga0079045_10013148F048414GGAGGMNLEKLKENASVSLFYSFLLFVVSFVLVIAGLNYIWGRPALIWLPLSIWNLLITLGIFLAIMIILVIVARRLL*
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