NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0097683_1054049

Scaffold Ga0097683_1054049


Overview

Basic Information
Taxon OID3300006188 Open in IMG/M
Scaffold IDGa0097683_1054049 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan - 1398105538256 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F017165Metagenome242Y
F062911Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0097683_10540491F001866GAGLQSIVAEVGDDDSALVIDAYSSRIFELAWLIAFGSELEQERAIDRRQYLHSMIVGIRDDDSMSIIIDRNACWTIELTRSRSMLADLEQEREIDRRQEHQSMVELIGDDDAMMMLVDRNALRVLELEIS*
Ga0097683_10540492F062911N/AMIAAISDEDAIMIVIDRNAIWIVELARLVALLAELGHERAAIIITREYLHSVVPAIDNKQETSMMVEYQAKRIVELAISIAWLLGADRELDSSITIKNIVSHLFQFNLSLSLTLSLSLSLSLSHNDKEMIQAPNCSNQRDEDMKLSLTHETRERHQASKQRAIRSNKNQSMKEQRTASPSLNQPLPHSHEPLLDLHGHDSARCLHALPIHIKRERERE*
Ga0097683_10540493F017165N/AHRGLIAFSTDYRVHVIGANQWLADTFTWRPDRHRHAPSWMKQAVSTMTMIRSLVDESAMSMIPNELLFEIFSFL*
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