NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075446_10010789

Scaffold Ga0075446_10010789


Overview

Basic Information
Taxon OID3300006190 Open in IMG/M
Scaffold IDGa0075446_10010789 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008385Metagenome334Y
F028621Metagenome / Metatranscriptome191N
F072752Metagenome121N
F076502Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0075446_1001078912F028621GGAMIKVKLDPFEVQLAFENSTKRYIENLKQGKGFSYGYTGGFEKQITDGVLGSLGEVAFAKGLNRYFNSSYSDSYARYTDSDMQDSIEIRSQKRKDNNFLLIRPNEKKAKYVLVIHEGDFEFSIMGWFPYKEDTEEMSK
Ga0075446_100107892F076502AGGMDNINKIEEYMVDKKVLTYHGSSGKDYQYYIKEINNDLVTIVVDAPIKTPIWSSDHQLWTLDTYNLLSHSKETNNKPTWGN*
Ga0075446_100107896F072752GAGMKLKHRIFKYIKECLGIEKQDNSLIEPNRTEVVDLPEDLVINLNNEEGGENGKK*
Ga0075446_100107899F008385GGAMLPIKTNIYGDYKVCIKCKNHADVIEKGKDYCVECWYLHINGKSIKEADQEIKEEERFKDKK*ETYSKHL*
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